PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076248.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 435aa    MW: 47333.5 Da    PI: 7.773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.5e-09112132425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     +lC+++ + G Ck+Gd+CkF H
  XP_011076248.1 112 KLCNHWVQ-GSCKFGDSCKFLH 132
                     69******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0592550IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7792551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-6108133IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-7112132IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6112132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.8E-46133427IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.6E-5139178IPR001680WD40 repeat
SuperFamilySSF509781.01E-45141428IPR017986WD40-repeat-containing domain
PfamPF004001.4E-4142178IPR001680WD40 repeat
PROSITE profilePS5008213.884146187IPR001680WD40 repeat
PROSITE profilePS5029420.224146348IPR017986WD40-repeat-containing domain
PRINTSPR003201.8E-6165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM0032021218255IPR001680WD40 repeat
SMARTSM003200.037262299IPR001680WD40 repeat
PfamPF004000.058266299IPR001680WD40 repeat
PROSITE profilePS5008211.21269308IPR001680WD40 repeat
PRINTSPR003201.8E-6286300IPR020472G-protein beta WD-40 repeat
SMARTSM003201.8E-5302339IPR001680WD40 repeat
PfamPF004000.0016304338IPR001680WD40 repeat
PROSITE profilePS500828.971309338IPR001680WD40 repeat
PRINTSPR003201.8E-6326340IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1343386IPR001680WD40 repeat
SMARTSM003201389426IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDVDGGRRMF QRLGSSSSSD SSSNNKQQKV CFHWRQGKCT RYPCPFLHSE LPTAVNGGKR  60
AHQGFGAEDN YRGGGGLRRS GNYNFSNSNT WGRVQSQQPG SSNRTAVKKI EKLCNHWVQG  120
SCKFGDSCKF LHQWSTGDCF TLLAPLEGHQ QVVTGIALPS GSDKLYTGSQ DETVRVWDCQ  180
SGQLAGLINL GGAMGCMLSE GPWVFVGLTN LVKAWNIQTS TELSLNGPVG QVYSLVVGGD  240
LLFAGTQEGT ILAWKFNVAA NCFEPAASLK GHSLAVVTLV VGGNRMYSGS MDHSIKVWSL  300
ETLQCIQTLS GHTDVVMSIL CWDHFLLSAS LDKTVKVWAA TETGNLEVTY THNEEHGILT  360
LCGMHDSEAK PVLFCSCNDH CIRVYDLPSF SERGKIFSKK EVRAIQIGPG GLFFTGDGSG  420
QVKVWKWSAE PTPIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovr_B2e-15146425114391F-box/WD repeat protein 7
2ovq_B2e-15146425114391F-box/WD repeat protein 7
2ovp_B2e-15146425114391F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076248.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLS8E4C30.0S8E4C3_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_16s0100g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1